FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1598974
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTTCG252.391384E-455.999718
CGTAGCG500.00721138727.9998514
GTATACG657.958047E-426.9246161
TCTGTCG3850.025.4544078
GTCTCGC4500.023.334671
TAATACT3350.022.986394
CTGTCGC4800.022.6040469
GTACCGG1102.9230916E-522.2740026
ATAATCG800.002667681821.87488470
TCGCTCT4500.021.7790244
TGTCGCC5150.021.74745610
GCGTAGT850.003790148320.5894131
GTATAGA2603.6379788E-1220.1934621
TCGCCCA5100.019.21558412
TAACACG1651.5930764E-619.0920014
ACACCGT1702.1196756E-618.5304726
GTGTAAA5900.018.3908821
GTATAAT3300.018.0313341
GTACTCG1200.001340865417.5010011
CTATTAC2401.029548E-817.5010011
Produced by FastQC (version 0.11.5)