FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1848228
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGTAA700.001226906424.99975810
GAGACGC4750.023.5787270
TAGTACT2551.8189894E-1220.5885944
GTATAAT2302.8376235E-1019.784561
TCTGTCG3900.019.74348
GTATTAG3650.019.1799721
TGCGCGG1651.5943715E-619.09072510
GTATAAG2951.8189894E-1218.9849221
GTATAAA4650.018.8190571
TAACACT5400.018.7966254
TCGCTCT5300.018.4908874
GTCTCGC5150.018.3513241
TTAGTAC2104.2755346E-818.333653
TCTCGTA5250.017.99982670
GTGTAGT5000.017.5017241
GTGTAGA4800.017.5017241
CTGCGTA1401.8665899E-417.499839
GTATATA4250.017.2958221
GTATTAC2501.704393E-816.8016551
GTCTCAC12600.016.6683081
Produced by FastQC (version 0.11.5)