FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1848228
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTCGC4000.026.2531971
TCTGTCG4700.025.319498
ACGATAA1701.4006218E-1024.70621770
GTATAGC2550.023.3361741
CGATACA2250.023.33364970
TGTCGCC5500.022.27242710
TCGCTCT4650.021.0772654
CGACGAA2700.020.7410270
GTATAAC2051.4551915E-920.49031
TAGACCG1055.4687844E-419.9997319
GTCTTGC10800.019.7709261
CTGTCGC5700.019.6488579
GTCGCCC5050.018.71261811
GTCTAAC1903.0056435E-718.4232961
GTATTAC2508.6583896E-1018.2022151
TAGTACT2701.2369128E-1018.1498664
TCTCGCT4850.018.0429442
GTGTATA5500.017.8203531
CGTATCA1803.6603924E-617.50023765
TAGTGCG1000.00969328817.4997639
Produced by FastQC (version 0.11.5)