FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1614338
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACTCG700.001225289725.0051781
AATATCG1001.3993244E-524.49976270
TCTGTCG3650.023.9723688
GTATAAT2700.023.3381651
CACGAGC3900.021.53825270
ATCTCGT4050.020.74053870
GTATAGA2453.092282E-1120.0041431
CTGTCGC4400.019.8861719
GTGTACG1257.816415E-519.604061
GTACGAG900.00527145619.4484711
GTCGCCC4350.019.31015611
TGTCGCC4950.019.09072310
GTATTAC2659.458745E-1118.4943961
TCGCTAT950.007212240718.42087410
TCGCTCT4800.018.2306824
GTATAGG1752.7920778E-618.0037291
GTGTAAA5850.017.9524351
GTCTCGC4150.017.7145121
CGACCCG1000.00969256317.4998336
GTATAGC2259.3839844E-817.1146551
Produced by FastQC (version 0.11.5)