FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1553365
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACGCG500.007210102428.0008223
TCCGATG2550.024.70581470
TCTGTCG4350.022.5286738
TGTCGCC4400.021.47721310
GTCTCGC3850.020.910381
GTATAAG3300.020.1527581
CTGTCGC5150.019.7086859
TACACCG900.00527678619.4450155
GTACTAC1852.2717722E-718.9200841
GTATTAC1903.0067713E-718.4221881
GAACGAT950.007211831418.4210016
GTACAGA6150.018.2125051
TAATACT2701.2369128E-1018.1486824
GTATTAG2952.3646862E-1117.7977071
TCGCCCA4150.017.71079412
TCGCTCT4550.017.692834
CGTAGTG1200.001341091517.5005152
CACGAGC3850.017.2726870
GTATAGG3053.8198777E-1117.2141761
CTCGCTC4950.016.9701983
Produced by FastQC (version 0.11.5)