FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1776905
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTAT3250.021.5400811
TCTGTCG3750.021.4664698
ATCTCGT3650.021.09569470
GTATAAG2950.020.171011
GTATAAA4700.020.1078951
GTCTCGC5000.018.901421
GTATAGG2801.0913936E-1118.751411
GTCTAAC2456.6211214E-1018.5728241
GGTATAC2508.6583896E-1018.2013681
GTATAGA3900.017.9500681
GTCTTGC10950.017.581231
GTATTAA3400.017.5013161
GCGTAGT1200.001340783217.5013161
TCGCTCT5650.017.345464
CTGTCGC5050.017.3265729
GTGTAAG5700.017.1942751
GTCTCAC12300.017.0744551
TGTCGCC5150.016.99013510
TCTCGCT5800.016.8968722
GACTCGC2108.5897045E-716.66651270
Produced by FastQC (version 0.11.5)