FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1908272
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTCG901.9296097E-423.33317810
TCTGTCG4700.023.0849518
GTCTTAC3900.022.4363351
TAGTGCG800.002667890921.8748519
GTCTCGC5300.021.7928771
TCGCTCT4950.021.2125364
GTGTATA6700.020.3735311
GTATTAG3500.020.000391
GTACGGA1055.467659E-420.000391
GTCGCCC5650.019.82287611
GTATTAC3250.019.3849931
GTGTTAG7500.019.1337071
CCCGTAC1107.478616E-419.0912823
GACGATA1107.478616E-419.09128270
GTATAGA3350.018.8063351
CTGTCGC5600.018.7498749
TGTCGCC6150.018.2112610
TACGTGT16250.018.09265970
CGACGAA1752.7976275E-618.00034970
GTATAAT3153.6379788E-1217.7781241
Produced by FastQC (version 0.11.5)