FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1854238
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTAC350.00125589940.00044635
TCTGTCG4750.024.3154078
GTCTCGC5500.024.1840461
GTATATA3650.023.0158181
CACGAGC8000.022.74964170
GGTATAC2207.2759576E-1222.2747781
AGTATCG11050.021.85485870
TATCGGG5400.021.38855270
TGTCGCC5900.021.35559710
GCGCTAG1003.9324397E-421.0019341
TCTCGCT6200.020.3239022
TCGCTCT5750.020.0882644
TCGCCCA6250.019.59969112
GTCTAAT2705.456968E-1219.4462361
GTCGTAG900.005275251319.4462361
GTCGCCC5600.019.37469311
CGCTCTG6650.018.9486035
CTGTCGC5950.018.8232339
GTATAGG2901.8189894E-1118.1051161
GTATAAT3300.018.0319631
Produced by FastQC (version 0.11.5)