FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1653213
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGATT350.001255984339.99963868
TACCGAA552.9941794E-431.8178947
TCTGTCG4250.028.8232698
CTGTCGC5550.022.7024979
GCCGACC3700.022.70249670
GTCTTGC9550.021.9899961
GTATAGA2550.021.961251
TGTCGCC5900.021.94895410
GTCTCGC4150.021.9281771
TCGCTCT3600.021.3893414
TGTACGG850.003790992820.588672
TCGCACT1601.1868142E-619.6879184
GTCGCCC5450.019.26587911
GTGTACG1107.477952E-419.0913141
TCGCCCA5900.018.38966412
CGCTCTG4300.017.9073565
GTACTAA2751.6007107E-1017.818561
CTCGCTC4600.017.500373
GTACAAG3307.2759576E-1216.9700551
TCTCGCT4600.016.7394852
Produced by FastQC (version 0.11.5)