FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1688014
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTAC2550.026.0812781
GTCTCGC3250.021.5408131
GTATTAA3400.019.5609591
GTATAAG3050.019.5103261
TCTGTCG3600.019.4442638
GTACTAT2203.5015546E-919.0929951
GTATAAC1301.0571243E-418.8482111
GTACTAG1903.0056617E-718.4230651
CACGAGC3850.018.1816570
GTACTAC2357.930794E-917.8742921
GTATAGC2952.3646862E-1117.7985531
TACTACG1000.00968610517.5019132
GTCTTAC4000.017.5019131
CATGCGA1000.00969271517.49983810
GTATAAT2259.395262E-817.1129781
GTATTAT3900.017.0531441
TCGCTCT3900.017.0531444
GTATAGG2151.0968761E-616.2808481
GTTATAC1957.83185E-616.1556111
TAATACT3701.8189894E-1216.0828364
Produced by FastQC (version 0.11.5)