FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1688014
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGACC3600.023.33315770
TCTGTCG4400.022.2725588
TGTCGCC5550.021.44127810
GTACTAG2151.1459633E-1021.1638831
GTATAAT2800.020.0010321
GTATAGG2302.8376235E-1019.783631
GTGTTAA3900.019.7446081
GTCTTGC10550.019.574471
ATTACGC900.00527810219.4442983
GTATTAG3450.019.2763581
GTCGCCC5550.018.91877611
CGCCGTA1301.05807165E-418.84601268
GTGTCGC1501.4964839E-518.6676311
GTGTAGG5650.018.585031
CTGTCGC5650.018.583939
TCGCTCT4900.018.571294
TCGCCCA6050.017.93374612
TGCGTAA1000.00969262417.49986610
GTGTAAT3850.016.3644831
GTGTAAC3701.8189894E-1216.081911
Produced by FastQC (version 0.11.5)