FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1743201
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAATCG957.650669E-933.15735270
GAGTCGT500.007206903328.003566
GCGAATG2200.027.04501370
GTCTCGC4450.025.1724571
TCTGTCG4250.023.8819648
GTACTCG1154.1170446E-521.3070556
TCGCTCT4450.021.2386534
CTGTCGC4750.019.8944119
GTATTAT3750.019.6030521
CGCTCTG5350.018.3200845
TGCGAAT14150.017.5615570
CTCGCTC5400.017.5022243
TGGTCGA1200.001340303917.5022226
GTATTAG4450.017.3060651
TCTCGCT5700.017.1951682
GTATATA4300.017.0956861
TGTCGCC5750.017.043210
TATACTG4600.016.7412575
GTCGCCC5250.016.66639311
GGTTAAC2753.075911E-916.548031
Produced by FastQC (version 0.11.5)