FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2090097
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG5900.026.6948598
CTGTCGC6650.024.2110569
GTCGCCC5900.023.7293311
TGTCGCC6750.023.33384310
CATATCG1202.1708474E-623.33272770
TTATACT4700.022.3430524
TCGCCCA6700.021.41837912
CTTATCG1003.9345346E-421.000469
GTCCCGA1408.246467E-620.002831
GTATAAG4500.019.4471951
ATCTCGT8100.018.57976370
GTCTTGC13000.018.5795521
GCGTAGT1903.0054798E-718.4236581
TCGCTCT5900.018.3919934
CGCTCTG6250.017.362045
GTCCGAA1250.001761577316.8023781
TATTATC4800.016.7728062
GTATAGA3800.016.5812931
GTATTAT4450.016.5191921
TAGTACT3207.8216544E-1116.4081784
Produced by FastQC (version 0.11.5)