FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1687463
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGTCG305.878595E-446.669244
TCTGTCG3700.027.4323168
CGTATCA1202.1700234E-623.33323565
CGACGAC1905.638867E-1022.1051770
TCGCTCT3500.022.0012114
CTGTCGC4800.021.8749089
TGTCGCC4350.021.72404510
GCCGACC2750.021.63627270
GTCTTGC8450.020.2969741
GTATTGG3650.020.1380941
GTGTACG900.00527618919.4455151
GTCTCGC4100.018.7815231
GTCTAGC4150.018.5552391
GTCGTGA1351.4123433E-418.1491471
GTATATA4350.017.7021241
GTGTTAA4400.017.5009631
CGCCGTA1200.00134145917.49992662
ATTTGCG1000.00969243117.49992616
GTCGCCC4200.017.49992411
GTATAAA4250.017.295071
Produced by FastQC (version 0.11.5)