FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2189689
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG6050.026.6114438
GTCTCGC6150.023.9045071
TGTCGCC6900.023.84046210
CTGTCGC7150.023.4963879
GTCGCCC6700.020.8954211
TCGCTCT6400.020.23524
TCTCGCT6850.019.928732
GTCTTAC5100.019.903681
TAATACT4400.019.8871774
CGCTCTG7550.019.0073975
TCGCCCA7100.018.23934712
GTATTAG5000.018.2015721
GTATAAC3350.017.762731
CTCGCTC7100.017.7476083
GTGTATA6800.017.5015131
GTCTTGC13700.017.1182691
GTATATA5500.016.5468851
GCACGTA1704.388979E-516.4705076
ATTAGAC4300.016.2801043
TAACTCG1300.00229176216.15376966
Produced by FastQC (version 0.11.5)