FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3759662
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTCGC14500.034.717341
TCTGTCG16200.034.2152948
GTCTTGC29050.034.1553041
TCGCTCT16900.032.37434
CTCGCTC18000.027.1963023
TCTCGCT18650.026.6362172
GTCTCAC38350.026.6334881
TTGCTCT38950.025.6909894
GTGTTAG21100.025.2409551
CGCTCTG19150.025.1871745
GTTACGC1450.001278593924.824213
CTTGCTC37850.024.5356333
GAGTGCA93750.023.9577056
GGAGTGC87200.023.7765855
TCTGTCA40600.023.0495198
GGCTGGA117500.023.03571
GTCTTAC10150.023.0011371
GTGTTAC10500.022.9292581
CTGGAGT100900.022.617343
TCACTCT43950.022.6044354
Produced by FastQC (version 0.11.5)