FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005349732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005349732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3788637
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG11450.026.8982478
GTCTCGC13050.024.9564571
TGTCGCC12950.024.32313210
CTGTCGC13600.024.1899919
TCGCTCT12600.024.1651634
TAATACT7100.021.6887914
GTCGCCC13050.021.4543211
GTCGTAA1003.9211233E-421.0117261
GTCTTGC25050.020.690191
GTATTAG7450.020.6826841
TCTCGCT15750.020.6672922
CTCGCTC15100.020.627313
CGAACGA850.003794295520.5864114
TCGCCCA13800.020.5419312
CGCTCTG14350.019.5109835
CGGTCGT900.00528055319.44349310
GTATTAT5700.019.0457171
CGCCGTA2053.2492608E-818.77956868
TATACGG950.00721617418.4199075
GTGTAAG12200.018.3709091
Produced by FastQC (version 0.11.5)