FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005349742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005349742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3531535
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9450.028.1475728
CTGTCGC10500.024.3328369
GTACTAT5800.023.5470031
GTCGCCC10500.022.66491911
GTATTAG6750.021.270571
TGTCGCC11750.021.14850410
GTCTCGC10200.020.9425091
GTGTATA11050.020.91611
TCGCTCT11250.020.221814
GTATAGA6200.019.7685781
GTATAAG6150.019.3598881
GTGTAAC6600.019.1010671
TCGCCCA13400.018.80478712
GCGTAGT2254.6075E-918.6765981
GTGTTAT9600.018.2388651
TCTCGCT12100.017.9347882
GTATAAT6550.017.6429711
CTCGCTC12500.017.638643
GTATACG1401.8594804E-417.5093121
GTATATA8550.017.202131
Produced by FastQC (version 0.11.5)