FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005349754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005349754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3686590
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9050.030.1649388
TGTCGCC11200.026.24929810
CGTTTCG1101.018163E-625.4538679
GTCGCCC9800.024.99797611
CTGTCGC11450.024.7591639
TCGCCCA11000.022.90785812
GTCTCGC10600.022.4662481
GTCTTGC24700.020.700621
TCGCTCT11800.020.1689534
GTGTTAG16000.018.385981
TAATACT6950.018.1290114
GTATAGG6000.018.094141
GTATTAT7200.017.9968591
TTGCTCT29500.017.9147764
GTATAAA7250.017.8727441
CGAACGA1000.00969655917.49929414
GTGTAGT13450.017.4453621
GTCTTAC11050.017.4312251
GTGTATA9700.017.3299371
GTATAAC4650.017.3221721
Produced by FastQC (version 0.11.5)