FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005349762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005349762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3482360
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG10400.030.2881018
TCGCTCT12050.027.8830854
CTGTCGC12000.027.7080049
GTCTCGC11900.027.6646061
TGTCGCC12600.025.55488410
GTCGCCC12050.024.10621311
TCTCGCT14450.022.042212
CTCGCTC14450.021.5562173
GTCTTGC23700.021.279321
TACACCG1656.8117515E-821.2115655
GTATTAT6450.021.1762221
CGCTCTG13400.021.156165
TCGCCCA14750.020.64263712
TTATACT5950.018.8230344
GTGCGGA3700.017.9843791
CGTGTTA3900.017.94824610
GTGCTAT9750.017.6009081
GTATCCG1000.0096588617.5111061
GGTATAC4900.017.1537381
CGTTTCG1452.4413304E-416.896359
Produced by FastQC (version 0.11.5)