FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005349763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005349763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3409312
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG8450.026.0946678
GTCTCGC10100.025.3051871
GTCGCCC8400.024.99999411
TCGCTCT10650.024.9790864
TGTCGCC9500.022.842110
GTATTAT6600.022.2799111
CGCTCTG11000.021.9567955
CTGTCGC9600.021.5104129
CTCGCTC11950.021.3829443
GTCTTGC22350.021.1477581
AATACCG1003.9330992E-421.002155
CGTGTTA3850.020.90908610
GGTATAC5250.020.6733321
GTATTAG6800.020.0800041
GTACTAT4900.020.0064531
TCTCGCT12100.019.9610182
GTATAGA6700.019.857151
GGCGTAC900.005269119519.4507141
GTACTAG4100.018.7865451
ACCGTGT6750.018.6666628
Produced by FastQC (version 0.11.5)