FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005349764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005349764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3409312
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9200.025.1089488
GTCGCCC9250.024.21468411
GTCTCGC9550.023.8376141
CTGTCGC9950.023.5680779
GGTATAC5050.022.8862881
TGTCGCC10950.022.69429210
TAATACT6100.021.8031794
TCGCCCA10950.021.09517512
GTCTTGC20500.021.0137731
TTATACT6900.020.7970054
TCGCTCT10300.020.3882564
GTATAAC4050.019.8895781
GTGTTAG17350.019.782421
TCTCGCT12150.019.0122592
GTATAAT5750.018.881941
GTATTAG7750.018.5282731
GTGTAAT10050.018.121331
GTATAAG6100.017.7985521
GTATTAT6950.017.6374591
GTATTGT8100.017.2952861
Produced by FastQC (version 0.11.5)