FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005349767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005349767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4121139
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGTCGC14050.024.9116749
TCTGTCG12600.024.7228628
TGTCGCC14900.023.0207310
TCGCTCT14450.023.0115344
GTCGCCC13250.022.98200611
GTCTTGC29550.021.8007471
GTATAGG7400.021.763921
GTATTAG10000.021.7071461
GTCTCGC15200.021.6518631
TCGCCCA15450.020.38912212
GTATTAT8900.020.0627821
GTATAGC5600.019.381381
CGCTCTG16450.018.7243425
CTCGCTC16500.018.455473
GTATAAT7850.018.2862741
TAATACT8500.018.1185534
TCTCGCT18200.017.6938382
GTGTAGC11750.016.9843121
TATAATA7500.016.8014532
GTAATAC6300.016.6675013
Produced by FastQC (version 0.11.5)