FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005349774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005349774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4375982
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG12600.025.5553158
GTCTCGC13250.024.0504261
GTATTAT8600.024.0243051
TACACCG2056.002665E-1122.1946585
CTGTCGC14400.022.1180979
TGTCGCC14250.021.8594410
GTCTTGC30550.021.2059521
GTCGCCC13100.021.10522311
TCGCCCA14900.019.96488612
TCGCTCT14750.019.6945024
GTACTAC4850.019.4948221
CGCTCTG14450.019.1345485
GTATTAG9950.019.0050031
GTATCGC1150.001005066118.270511
GTATTAA9100.018.0864661
TCTCGCT16500.018.0319882
GTATAAC4950.017.6860981
GTGTAAT12200.017.509241
GTATAGA8600.017.509241
CTCGCTC16200.017.2826023
Produced by FastQC (version 0.11.5)