FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005349889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005349889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2197275
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9700.037.112788
GTCTCGC11300.034.419821
TCGCTCT11150.033.5779154
TACACCG1751.07358574E-732.9137345
GTATTAG7450.031.9044251
TCTCGCT13050.030.9079912
CTGTCGC12900.030.1390329
GTGTTAC9450.028.96311
GTCTTGC20500.028.8106651
CTCGCTC13500.028.8106633
CGCTCTG13700.027.8535485
GTATTAC4950.027.6465931
GTGTTAG16200.027.5657581
GTCTTAC9450.026.676541
GTACCGT1358.4201404E-426.666226
GTATAAG5950.026.6317041
GTATAGG5950.024.210641
GTGTATA12650.023.9139881
TGTTAGC14200.023.839812
GTGTAAC7200.023.0085161