FastQCFastQC Report
Wed 15 May 2024
EGAF00005394167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485125643
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC18371996237.87059386592764No Hit
GGTTTACT11737272824.194294755101208No Hit
AACCGTAA9072308918.70094692149679No Hit
CTAAACGG9051662618.658388255926518No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)