FastQCFastQC Report
Wed 15 May 2024
EGAF00005394170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466510828
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATCA13750919729.476099748750094No Hit
AGTTCGGC13215538328.328470652346788No Hit
TCCGGAAG10268901722.012140091204916No Hit
GTAATCTT9064783119.43102401044376No Hit
TCCGGCAG5674080.12162804504078949No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)