FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005394173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504154706
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGCATA15166068430.08217164197214No Hit
GGTAACGC13010175625.805919185449394No Hit
AACTGGCG11364585122.541860593085488No Hit
CCACTTAT10576503820.978687046114768No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)