FastQCFastQC Report
Sat 4 May 2024
EGAF00005394179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences371143001
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCAGC10935836729.465291465916664No Hit
ACCCTCCT10491873128.26908515513135No Hit
CAATGGAG7622202920.53710531914355No Hit
TGGAATTA6872609418.517416148176267No Hit
CAAGGGAG36047980.9712692925064751No Hit
CACTGGAG30926310.8332720788664421No Hit
CCATGGAG17809480.47985493332797613No Hit
ACCCTCCA5485540.14780125141036943No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)