FastQCFastQC Report
Sun 12 May 2024
EGAF00005394182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences613148222
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGAGC18959939930.922278202414816No Hit
TGCTCGTA16966216727.670661173343497No Hit
ATGAATCT15892850325.92007891364317No Hit
GATCTCAG9113697014.8637746518655No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)