FastQCFastQC Report
Fri 3 May 2024
EGAF00005394185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences323059773
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGTCGG12299391338.07156547466527No Hit
GTATGTCA7315397422.64409874391882No Hit
ACGACATT6754241420.907095108990866No Hit
TGTCAGAC5694930217.628100667302824No Hit
CACGTCGA5406950.16736686062117676No Hit
ACGACATA4877220.15096958543334332No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)