FastQCFastQC Report
Mon 13 May 2024
EGAF00005394188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences593826824
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATGTG20685306434.83390369714925No Hit
TTTCATGA19530190332.88869668844734No Hit
GAAGGAAC16888610628.440295920347307No Hit
ACGTCCCT174842002.9443264085355634No Hit
CGCATGTA8803980.1482583750713154No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)