FastQCFastQC Report
Wed 1 May 2024
EGAF00005394191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences203091696
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCTCAG5747942928.302205423504855No Hit
GCCGAAGT5560194527.377754036777556No Hit
CAATGGCA4570731922.5057547404597No Hit
TTGACTTC4276707421.058012140486532No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)