FastQCFastQC Report
Fri 10 May 2024
EGAF00005394194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116383207
Total Bases931 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTAAC3707287131.854141121923202No Hit
GACAGGCT2760610123.720003694347415No Hit
TTATCTGA2605285122.385403935466393No Hit
AGGGACTG2502842921.505189318249325No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)