FastQCFastQC Report
Sat 11 May 2024
EGAF00005394198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144794243
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAGAAC4706285732.503265340459706No Hit
TGCTCTGT3814316126.343009369509257No Hit
AATCACTA3029348320.92174548680088No Hit
GTAGTGCG2856562319.728424561741726No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)