FastQCFastQC Report
Mon 6 May 2024
EGAF00005394202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences150680156
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCCGCT5536532736.74360876026701No Hit
CATTGATA3992683726.497740684579597No Hit
ATGGTTAG3480362823.097685139110155No Hit
GCAAACGC1925401712.778070789892201No Hit
ATGGGTAG2323160.1541782316710636No Hit
TGCCCGCA1639030.10877543822027898No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)