FastQCFastQC Report
Fri 10 May 2024
EGAF00005394204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126186285
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTGAGC3291480226.084294343081737No Hit
GATCTTAT3151724224.976757180861615No Hit
ATAACCTA3074200824.362400398743812No Hit
TCCGAGCG3006141723.823046220910616No Hit
ATAATCTA2915420.2310409566301124No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)