FastQCFastQC Report
Fri 10 May 2024
EGAF00005394207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109872520
Total Bases878.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAACTC3069588527.937727286131235No Hit
GGTCCAAG3021144127.49681266981043No Hit
AACGGTCA2902378726.41587450620046No Hit
TTATTGGT1902539417.31588025832119No Hit
GTATTGGT1634060.1487232658357158No Hit
CCGACCTC1536410.1398356932197423No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)