FastQCFastQC Report
Wed 8 May 2024
EGAF00005394210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59668940
Total Bases477.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGCGC1725332828.915090497669304No Hit
GGCGAGTA1586945826.595843666738507No Hit
CAAATACG1356330322.730926676424954No Hit
ACTTCTAT1193357819.999648058101922No Hit
CCTTCTAT3054680.5119380367742413No Hit
GCCGAGTA873680.1464212369115322No Hit
GTGCGCGC802330.1344635919458264No Hit
TCTTCTAT624520.10466416866128342No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)