FastQCFastQC Report
Wed 8 May 2024
EGAF00005394211

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394211
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45890874
Total Bases367.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACGT1531935433.38213606478709No Hit
CCTGTGCG1193612326.00979663189679No Hit
TACTCTTC997147921.728675291736653No Hit
ATGAGAAA702405115.305986545385908No Hit
AGGAGAAA11220422.445022075630985No Hit
ATGAAAAA875920.1908701934942446No Hit
CTGAGAAA462260.10073026719865914No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)