FastQCFastQC Report
Wed 8 May 2024
EGAF00005394217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89619413
Total Bases716.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGAGAT3259784736.37364484857762No Hit
ATGCCTTA2115669123.60726352894099No Hit
TAATGACC1926046521.491398297821924No Hit
CGTATCGG1577920917.60690956545319No Hit
GCCGCGAT949070.10590004645533663No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)