FastQCFastQC Report
Wed 8 May 2024
EGAF00005394220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62564745
Total Bases500.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATGCAT2271495536.30631755951375No Hit
CACCTGCC1598639625.551764016619906No Hit
GCTACTGA1182561918.901410051299656No Hit
ATGGAATG1140699218.232299995788363No Hit
CACCTGCA1028060.1643193782696629No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)