FastQCFastQC Report
Wed 8 May 2024
EGAF00005394223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71515807
Total Bases572.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCCGC2087392329.18784514310242No Hit
CCCGATTA1846126825.814248310167287No Hit
TGGAGGCT1785622524.96822136118802No Hit
ATTCTAAG1360270119.020551638325216No Hit
CCCGATAA1023070.1430550871082249No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)