FastQCFastQC Report
Wed 8 May 2024
EGAF00005394226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39433218
Total Bases315.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC1146894229.084468835386453No Hit
TCAGCCGT1105610628.037544387069808No Hit
GGTCAATA1080996127.413337151434103No Hit
ATCTTTAG570332614.463252783478135No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)