FastQCFastQC Report
Fri 10 May 2024
EGAF00005394229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36636325
Total Bases293 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCAC1371773937.44299953666204No Hit
GGCAATGG980804926.77137786063422No Hit
ACATTACT676013318.45199538982144No Hit
TTTGGGTA596406316.279097316665904No Hit
GGCAATGA428360.11692220767230337No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)