FastQCFastQC Report
Wed 8 May 2024
EGAF00005394232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46179747
Total Bases369.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAAGGCC1357654729.39935335721956No Hit
CTCCTAGT1141718224.72335329164969No Hit
GATGCCAA1085606823.508288167971124No Hit
AGGTATTG978803021.19550373457005No Hit
GATGTCAA1080100.23389041087643897No Hit
GATGCCGA714970.15482328216306598No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)