FastQCFastQC Report
Thu 9 May 2024
EGAF00005394238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44775447
Total Bases358.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCCGA1759731339.30125588695965No Hit
CCAAGATG1128540025.204438495052877No Hit
TACGTGAC835064318.650049434459024RNA PCR Primer, Index 17 (100% over 8bp)
GTTTATCT692262915.460770274387212No Hit
ATGCCCGA2915070.6510420766988658No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)