FastQCFastQC Report
Wed 8 May 2024
EGAF00005394241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44903115
Total Bases359.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACAGT1481389932.99080475819996No Hit
GGATGCCG1087894224.227588665062548No Hit
ATGCTGAA971082121.626163351918905No Hit
TATGATTC907381420.207537940296568No Hit
ATGCTTAA489590.1090325248036801No Hit
GGATGCCA462810.10306857330499232No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)