FastQCFastQC Report
Wed 8 May 2024
EGAF00005394244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39150616
Total Bases313.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATGAC1046680226.734705783428797No Hit
ACTTCATA997524225.479144440537027No Hit
CTAGACCT966585524.688896338182776No Hit
TGCCGTGG851654621.753287355682986No Hit
CTAGACCA1262870.3225670829802525No Hit
TGCCGTGA606030.15479449927428984No Hit
ACATCATA397240.10146455933158242No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)