FastQCFastQC Report
Wed 8 May 2024
EGAF00005394247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56015345
Total Bases448.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC2294248040.957491201741234No Hit
CATCACTT1643723829.34416988773344No Hit
ACAATTCA1105484819.735392150133148No Hit
GTGTGGAG44772577.992911585209374No Hit
GTGGGGAG5278290.9422935804465724No Hit
GGGTGGAG1675380.29909304316522556No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)